關於「hisat2-build」標籤，搜尋引擎有相關的訊息討論：

Manual | HISAT2。

When the genome is longer, hisat2-build builds a “large” index using 64-bit numbers. Small indexes are stored in files with the .ht2 extension, and large ...： 。

HISAT2 graph-based alignment of next generation sequencing ...。

HISAT2 2.0.3-beta release 3/28/2016 · Fixed graph index building when using both SNPs and transcripts. As a result, genome_snp_tran indexes here on the HISAT2 ...： 。

HISAT2 build index - Biostars。

You should build the index with something like: hisat2-build genome.fa index_name. Where genome.fa is the fasta file of the genome you feed hisat2-build, ...building index with HISAT2How many index files will be generated from hisat2-buildhisat2-build indexing produces more than 8 output filesHisat2 build index errorwww.biostars.org 的其他相關資訊： 。

Graph-based genome alignment and genotyping with HISAT2 and ...。

We have built a new alignment system, HISAT2, that enables fast search through its graph index. And now, in contrast to other graph aligner development ...。

Comparison of Burrows-Wheeler Transform-Based Mapping ... - NCBI。

2018年2月26日 · Most alignment algorithms rely on the construction of auxiliary data ... To our knowledge, this is the first evaluation of HISAT2 applied to ...。

Comprehensive analysis of circRNA expression profiles in humans ...。

2017年10月16日 · One approach uses the annotated genome to build a reference scrambled ... reads are realigned to the pseudo circRNA reference by hisat2.。

CIRCexplorer pipelines for circRNA annotation and quantification ...。

2021年2月12日 · hisat2-build hg38.fa hg38. Then, the ribo− RNA-seq dataset in PA1 cells is aligned to human reference genome (GRCh38/hg38) by aligner ...。

DaehwanKimLab/hisat2: Graph-based alignment - GitHub。

The original sequence FASTA files are no longer used by HISAT2 once the index is built. Example for HISAT2 index building: hisat2-build genome.fa genome ...： 。

HSRA: Hadoop-based spliced read aligner for RNA sequencing data。

2018年7月31日 · ... read aligner for RNA-seq data (HISAT2) to distributed memory systems such as multi-core clusters or cloud platforms. HSRA has been built ...。

Systems Medicine: Integrative, Qualitative and Computational ...。

Transcript-level expression analysis of RNA-seq experiments with HISAT, ... Creating a universal SNP and small indel variant caller with deep neural ...