關於「HTSeq」標籤，搜尋引擎有相關的訊息討論：

Evaluation and comparison of computational tools for RNA-seq ...。

2017年8月7日 · Alternative promoter usage results in either a full-length (FL) or a ... Anders S, Pyl PT, Huber W. HTSeq--a python framework to work with ...： tw | tw。

Gene expression units explained: RPM, RPKM, FPKM, TPM。

2021年4月4日 · ... gene length must be in bp nm = norm() nm.rpkm(df=df, 'length') # get RPKM ... which can be obtained from RSEM, featureCounts or HTSeq ...。

[PDF] Assembly and Analysis of Next-Generation Sequencing Data。

1.11. htseq-count Modes of How to Treat Reads on Overlapping Features . . 23 ... GL is the length of the respective gene. b) Distribution of the fraction of.。

Comparison of Legacy and Harmonized TCGA Genomic Data ...。

2019年7月24日 · 2011), FPKM-HTSeq (Anders et al., 2015), and MuTect (Cibul- ... Chiu, H.S., Somvanshi, S., Patel, E., Chen, T.W., Singh, V.P., Zorman, B., ...。

(PDF) RNA-Seq workflow: Gene-level exploratory analysis and ...。

2015年10月14日 · htseq-count HTSeq Python files DESeqDataSetFromHTSeq ... we will demonstrate the construction of the DESeqDataSet from two starting points:.。

High-density spatial transcriptomics arrays for in situ tissue profiling。

2019年3月13日 · Mapped reads were counted using the HTseq count tool. ... Plexiform Layer (IPL), Subependymal Zone (SEZ) and the Granular Cell Layer (GL).。

The Arabidopsis Transcriptome Responds Specifically and ... - NCBI。

2020年2月19日 · (F) The expression level of HL marker genes under GL and HL from RNA-seq ... were generated using HTSeq version 0.6.0 (Anders et al., 2015).： tw | tw。

Direct RNA sequencing on nanopore arrays redefines the ... - NCBI。

2019年2月14日 · The in-frame fusion of ICP0 (ORF RL2) and glycoprotein L [gL] (ORF UL1), arises through splicing from the canonical exon 2 splice donor within ...： HTSeq? tw。

GenPipes: an open-source framework for distributed and scalable ...。

In parallel, gene-level expression is quantified using htseq-count [26], ... MB, RD, RE, LL, JF, MM, MC, JS, FL, GL, EM, DB, PM, PTV, DALM, JT, XS, EH, ...。

Transcriptomic and open chromatin atlas of high-resolution ... - Nature。

2020年1月24日 · Read counts of genes were generated using HTSeq (v0.6.1), ... sex, and region at level i, j, and k for gene g, δgl is a random effect for ...